| Protein ZmMYB54 | |
|---|---|
|
ZmMYB54 is a protein in the MYB family.
|
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| Information | |
| TF Name: | ZmMYB54 |
| Species: | Maize |
| TF Family: | MYB |
| Gene Name(Synonym): | MYB54 |
| Uniprot ID: | Q8S417 |
Protein ZmMYB54
ZmMYB54 is a protein in the MYB family.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF00249 | PF13921 | |
| Zm00001eb075640_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d002843 | DAPseq |  |
sequence | fimo | position |
| Zm00001d002843 | DAPseq |  |
sequence | fimo | position |
| Zm00001d002843 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d002843 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMYB54 is the regulator
Interactions where ZmMYB54 is the target
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Zm00001eb075640_T001 from maize genome v5
Amino Acid Sequence
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MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00249 |
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| PF13921 |
|
| PF00249 |
|
| PF13921 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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AACGATCTGACAAAAGTATATTGTT...
AACGATCTGACAAAAGTATATTGTTTTCTTTTCTGACAGAAGAGGCAGCAGTACTAAAATTTAACTAGTACGTGCTGATTACTCCGACTTCCTAGGCACCAGGAAGGGCAGTTGTCCGGCGCGCAATGCAGCACCAGACAGACAACCGGTCGTCCCCTACCACCGCATTCAAGCCCACTCGCCCCGCCCGGCGATCCCATGCAAGAAAGCACCTCGCCCCTAATAAATGCATGGCCCTGGTCCCGGCTGCCCGTCGATCGCCCGTAATAATTGAAGCCAGCCACGCTGCCCTTCCCTTCCCCTTGCTCTCGTCGACGTCGGAGCAGCAGCCCAGCCAGCAGGTGAAAAATCCGGAGCATTTATTATGGCCACCGGGATCCCCCTCGGCCTATAAAAATCCGTCTCGGCTCCTCCCCCTCGCTTCTCGTTCCTGTCGCCGCCCGAGGAGAGACGGAGAGCGACCGACCGCCATGGGGAGAACTCCGTGCTGCCACAGCAATGGGATCAAGAAGGGACAGTGGGCGCTGGAGGAGGACAAGCTGCTCGTCGACTACGTCCAGGCCAACGGTGCCGGAAATTGGCGCATGCTCCCCAAGCTCGCGGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACCAACTACCTGCGCCCGGACATCAAGCGCGGGCACTTCACCCCCGAGGAGCACAACTCTATCCTCCAGCTCCACGCCATCATCGGCAACAGGTGGTCCACGATCGCGGCACAGCTGCCGGGCCGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATGAAGCAGCAGCTCCGACAGGAGGCGCTCGCCGTCGCCGTCGCCGGCGAGGGCGCTGGCGCGCAGCTCGCCAAGGCGGCCGCCGCGTCCTGTCCCGTCGCTCGCCACATGGCCCAGTGGGAGACCGCCCGCCTCGAGGCCGAGGCGCGCCTCTCCCTGCTCTCGTCGACCTCGGCCACGACGATCGTCACCTCCGCCACCGCCTCTTCCTCCTCGTCCACCGTCGCGCCCGAGCACGCGGCGCCCGACATCTTCCTGCGCCTCTGGAACTCCGAGGTCGGGGATTCTTTCCGCGGCACCGCAGTGAAGGGGCATGGTCCGGCGTCGAGTGGTGTGCCGGCGGCGCTACCTGCTGAGCTCGGCGACGACGATTCCTCGGCCGCGTCGACCTACGGGACCGAGGCGGCGGCGAGCGACGACTACCAGTCGTTCCTGGACCTGGCGGCGATGGAGGAGTTCGGGCTGCTGCAAGGCCGGCTCGACGCGTTCTCGGTGCTCCCGCATGTCGACGTGTTCGCCGAGGCGCCCTGCTGCCTGTTCGAGTAGCTTTGCTGTTTGCTCGATCTCATTTCCAGACCCACTCAGAGTAGTCACCAGAGTAGTAGACTAGACGTACGTGGCCGCGTTCTGCATGCGTTCGTCTGCGTACGCGTACGTACATACATACGTACACATGCCGGTTGTCTTGGGGACGACACGATGGCGTATGTACAGTACGTGCCTGTACGCAGCGAGCGGATGGGTGCAGGAGTTGGCGTGTGACAGTATGCAAGTCTGTGCCCTAGAGCAAGAGGTTTTTGGGACTGCTCTAGCCGTGGCATTTCTCTGGTGAATGTCGTCAACTTTCAAGTCTTTTGCCTCTGCGTGTGTACATTGTCGCGGTTTCGATTTGTGTGTTCTGTGTCTGTGTGTGTGGTGTGGGTCAGAATTCTCTGTTGTATGTATCACCAGTTTGGATGAGAAAAGAGTACGCACTTTTTG
GRMZM2G123202_T01 from maize genome v3
Amino Acid Sequence
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MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
Nucleotide Sequence
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AAGCCAGCCACGCTGCCCTTCCCTT...
AAGCCAGCCACGCTGCCCTTCCCTTCCCCTTGCTCTCGTCGACGTCGGAGCAGCAGCCCAGCCAGCAGGAGAGACGGAGAGCGACCGACCGCCATGGGGAGAACTCCGTGCTGCCACAGCAATGGGATCAAGAAGGGACAGTGGGCGCTGGAGGAGGACAAGCTGCTCGTCGACTACGTCCAGGCCAACGGTGCCGGAAATTGGCGCATGCTCCCCAAGCTCGCGGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACCAACTACCTGCGCCCGGACATCAAGCGCGGGCACTTCACCCCCGAGGAGCACAACTCTATCCTCCAGCTCCACGCCATCATCGGCAACAGGTGGTCCACGATCGCGGCACAGCTGCCGGGCCGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATGAAGCAGCAGCTCCGACAGGAGGCGCTCGCCGTCGCCGTCGCCGGCGAGGGCGCTGGCGCGCAGCTCGCCAAGGCGGCCGCCGCGTCCTGTCCCGTCGCTCGCCACATGGCCCAGTGGGAGACCGCCCGCCTCGAGGCCGAGGCGCGCCTCTCCCTGCTCTCGTCGACCTCGGCCACGACGATCGTCACCTCCGCCACCGCCTCTTCCTCCTCGTCCACCGTCGCGCCCGAGCACGCGGCGCCCGACATCTTCCTGCGCCTCTGGAACTCCGAGGTCGGGGATTCTTTCCGCGGCACCGCAGTGAAGGGGCATGGTCCGGCGTCGAGTGGTGTGCCGGCGGCGCTACCTGCTGAGCTCGGCGACGACGATTCCTCGGCCGCGTCGACCTACGGGACCGAGGCGGCGGCGAGCGACGACTACCAGTCGTTCCTGGACCTGGCGGCGATGGAGGAGTTCGGGCTGCTGCAAGGCCGGCTCGACGCGTTCTCGGTGCTCCCGCATGTCGACGTGTTCGCCGAGGCGCCCTGCTGCCTGTTCGAGTAGCTTTGCTGTTTGCTCGATCTCATTTCCAGACCCACTCAGAGTAGTCACCAGAGTAGTAGACTAGACGTACGTGGCCGCGTTCTGCATGCGTTCGTCTGCGTACGCGTACGTACATACATACGTACACATGCCGGTTGTCTTGGGGACGACACGATGGCGTATGTACAGTACGTGCCTGTACGCAGCGAGCGGATGGGTGCAGGAGTTGGCGTGTGACAGTATGCAAGTCTGTGCCCTAGAGCAAGAGGTTTTTGGGACTGCTCTAGCCGTGGCATTTCTCTGGTGAATGTCGTCAACTTTCAAGTCTTTTGCCTCTGCGTGTGTACATTGTCGCGGTTTCGATTTGTGTGTTCTGTGTCTGTGTGTGTGGTGTGGGTCAGAATTCTCTGTTGTATGTATCACCAGTTTGGATGAGAAAAGAGTACGCACTTTTTGC
Zm00001d002843_T001 from maize genome v4
Amino Acid Sequence
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MGRTPCCHSNGIKKGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDIKRGHFTPEEHNSILQ
LHAIIGNRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRQEALAVAVAGEGAGAQLAKAAAASCPVARHMAQWETARLEAEA
RLSLLSSTSATTIVTSATASSSSSTVAPEHAAPDIFLRLWNSEVGDSFRGTAVKGHGPASSGVPAALPAELGDDDSSAAS
TYGTEAAASDDYQSFLDLAAMEEFGLLQGRLDAFSVLPHVDVFAEAPCCLFE
Nucleotide Sequence
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GTCGCCGCCCGAGGAGAGACGGAGA...
GTCGCCGCCCGAGGAGAGACGGAGAGCGACCGACCGCCATGGGGAGAACTCCGTGCTGCCACAGCAATGGGATCAAGAAGGGACAGTGGGCGCTGGAGGAGGACAAGCTGCTCGTCGACTACGTCCAGGCCAACGGTGCCGGAAATTGGCGCATGCTCCCCAAGCTCGCGGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACCAACTACCTGCGCCCGGACATCAAGCGCGGGCACTTCACCCCCGAGGAGCACAACTCTATCCTCCAGCTCCACGCCATCATCGGCAACAGGTGGTCCACGATCGCGGCACAGCTGCCGGGCCGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATGAAGCAGCAGCTCCGACAGGAGGCGCTCGCCGTCGCCGTCGCCGGCGAGGGCGCTGGCGCGCAGCTCGCCAAGGCGGCCGCCGCGTCCTGTCCCGTCGCTCGCCACATGGCCCAGTGGGAGACCGCCCGCCTCGAGGCCGAGGCGCGCCTCTCCCTGCTCTCGTCGACCTCGGCCACGACGATCGTCACCTCCGCCACCGCCTCTTCCTCCTCGTCCACCGTCGCGCCCGAGCACGCGGCGCCCGACATCTTCCTGCGCCTCTGGAACTCCGAGGTCGGGGATTCTTTCCGCGGCACCGCAGTGAAGGGGCATGGTCCGGCGTCGAGTGGTGTGCCGGCGGCGCTACCTGCTGAGCTCGGCGACGACGATTCCTCGGCCGCGTCGACCTACGGGACCGAGGCGGCGGCGAGCGACGACTACCAGTCGTTCCTGGACCTGGCGGCGATGGAGGAGTTCGGGCTGCTGCAAGGCCGGCTCGACGCGTTCTCGGTGCTCCCGCATGTCGACGTGTTCGCCGAGGCGCCCTGCTGCCTGTTCGAGTAGCTTTGCTGTTTGCTCGATCTCATTTCCAGACCCACTCAGAGTAGTCACCAGAGTAGTAGACTAGACGTACGTGGCCGCGTTCTGCATGCGTTCGTCTGCGTACGCGTACGTACATACATACGTACACATGCCGGTTGTCTTGGGGACGACACGATGGCGTATGTACAGTACGTGCCTGTACGCAGCGAGCGGATGGGTGCAGGAGTTGGCGTGTGACAGTATGCAAGTCTGTGCCCTAGAGCAAGAGGTTTTTGGGACTGCTCTAGCCGTGGCATTTCTCTGGTGAATGTCGTCAACTTTCAAGTCTTTTGCCTCTGCGTGTGTACATTGTCGCGGTTTCGATTTGTGTGTTCTGTGTCTGTGTGTGTGGTGTGGGTCAGAATTCTCTGTTGTATGTATCACCAGTTTGGATGAGAAAAGAGTACGCACTTTTTGCAGGAT
Zm00001d002843_T002 from maize genome v4
Amino Acid Sequence
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MGSRRDSGRWRRTSCSSTTSRPTVPEIGACSPSSRAEPVRQELPAAVDQLPAPGHQARALHPRGAQLYPPAPRHHRQQVK
VSSLNSVLSLSSRAVTVSTCWNVVVSIRWSTIAAQLPGRTDNEIKNYWNTHMKQQLRVLSRRSPHGPVGDRPPRGRGAPL
PALVDLGHDDRHLRHRLFLLVHRRARARGARHLPAPLELRGRGFFPRHRSEGAWSGVEWCAGGATC
Nucleotide Sequence
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GCATTTATTATGGCCACCGGGATCC...
GCATTTATTATGGCCACCGGGATCCCCCTCGGCCTATAAAAATCCGTCTCGGCTCCTCCCCCTCGCTTCTCGTTCCTGTCGCCGCCCGAGGAGAGACGGAGAGCGACCGACCGCCATGGGGAGAACTCCGTGCTGCCACAGCAATGGGATCAAGAAGGGACAGTGGGCGCTGGAGGAGGACAAGCTGCTCGTCGACTACGTCCAGGCCAACGGTGCCGGAAATTGGCGCATGCTCCCCAAGCTCGAGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACCAACTACCTGCGCCCGGACATCAAGCGCGGGCACTTCACCCCCGAGGAGCACAACTCTATCCTCCAGCTCCACGCCATCATCGGCAACAGGTAAAAGTCTCGAGCCTAAACTCCGTACTCTCTCTCTCCTCACGCGCCGTCACCGTCAGTACGTGCTGGAACGTTGTGGTGTCGATCAGGTGGTCCACGATCGCGGCACAGCTGCCGGGCCGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATGAAGCAGCAGCTCCGCGTCCTGTCCCGTCGCTCGCCACATGGCCCAGTGGGAGACCGCCCGCCTCGAGGCCGAGGCGCGCCTCTCCCTGCTCTCGTCGACCTCGGCCACGACGATCGTCACCTCCGCCACCGCCTCTTCCTCCTCGTCCACCGTCGCGCCCGAGCACGCGGCGCCCGACATCTTCCTGCGCCTCTGGAACTCCGAGGTCGGGGATTCTTTCCGCGGCACCGCAGTGAAGGGGCATGGTCCGGCGTCGAGTGGTGTGCCGGCGGCGCTACCTGCTGAGCTCGGCGACGACGATTCCTCGGCCGCGTCGACCTACGGGACCGAGGCGGCGGCGAGCGACGACTACCAGTCGTTCCTGGACCTGGCGGCGATGGAGGAGTTCGGGCTGCTGCAAGGCCGGCTCGACGCGTTCTCGGTGCTCCCGCATGTCGACGTGTTCGCCGAGGCGCCCTGCTGCCTGTTCGAGTAGCTTTGCTGTTTGCTCGATCTCATTTCCAGACCCACTCAGAGTAGTCACCAGAGTAGTAGACTAGACGTACGTGGCCGCGTTCTGCATGCGTTCGTCTGCGTACGCGTACGTACATACATACGTACACATGCCGGTTGTCTTGGGGACGACACGATGGCGTATGTACAGTACGTGCCTGTACGCAGCGAGCGGATGGGTGCAGGAGTTGGCGTGTGACAGTATGCAAGTCTGTGCCCTAGAGCAAGAGGTTTTTGGGACTGCTC
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